How to Deal With Parameters for Whole-Cell Modelling

Babtie, Ann C and Stumpf, Michael PH (2017). Journal of The Royal Society Interface, 14, 133, 20170237.
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Learning Regulatory Models for Cell Development From Single Cell Transcriptomic Data

Babtie, Ann C and Chan, Thalia E and Stumpf, Michael PH (2017). Current Opinion in Systems Biology, 5, 72-81.
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Model of Host-Pathogen Interaction Dynamics Links In Vivo Optical Imaging and Immune Responses

Ale, Angelique and Crepin, Valerie F and Collins, James W and Constantinou, Nicholas and Habibzay, Maryam and Babtie, Ann C and Frankel, Gad and Stumpf, Michael PH (2017). Infection and Immunity, 85, 1, e00606-16.
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Gene Regulatory Network Inference From Single-Cell Data Using Multivariate Information Measures

Chan, Thalia E and Stumpf, Michael PH and Babtie, Ann C (2017). Cell Systems, 5(3), 251-267.
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Stem Cell Differentiation as a Non-Markov Stochastic Process

Stumpf, Patrick S and Smith, Rosanna CG and Lenz, Michael and Schuppert, Andreas and Müller, Franz-Josef and Babtie, Ann and Chan, Thalia E and Stumpf, Michael PH and Please, Colin P and Howison, Sam D and others (2017). Cell Systems, 5(3), 268-282.
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Control Mechanisms for Stochastic Biochemical Systems Via Computation of Reachable Sets

Lakatos, Eszter and Stumpf, Michael PH (2017). Royal Society Open Science, 4(8), 160790.
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Single Cell Phenotyping Reveals Heterogeneity Among Hematopoietic Stem Cells Following Infection

MacLean, Adam L and Smith, Maia A and Liepe, Juliane and Sim, Aaron and Khorshed, Reema and Rashidi, Narges M and Scherf, Nico and Krinner, Axel and Roeder, Ingo and Lo Celso, Cristina and others (2017). Stem Cells, 35(11), 2292-2304.
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Protein Degradation Rate Is the Dominant Mechanism Accounting for the Differences in Protein Abundance of Basal p53 in a Human Breast and Colorectal Cancer Cell Line

Lakatos, Eszter and Salehi-Reyhani, Ali and Barclay, Michael and Stumpf, Michael PH and Klug, David R (2017). PLoS ONE, 12(5), e0177336.
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Theoretical Systems Biology Group

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